Urgent Alert: GST Amnesty Application Stuck? Your Step-by-Step Guide to the Alternate Filing Route (Advisory 609 Explained)

The GST Amnesty Scheme under Section 128A of the CGST Act offers a one-time opportunity for taxpayers to resolve past defaults and avoid severe penalties. However, a large number of taxpayers have GST Amnesty Scheme application issues and have been unable to file their GST amnesty applications due to technical glitches on the GST portal—particularly while submitting Forms SPL-01 and SPL-02.

On June 11, 2025, the GSTN released Advisory No. 609 with an official workaround to address these ongoing GST amnesty applications issues. If you’re affected, this guide provides a step-by-step solution based on the advisory, along with expert insights on how TaxPower GST Software simplifies your compliance journey.

Final Call for Amnesty: The June 30, 2025 Deadline is Here!

The GST Amnesty Scheme is your last chance to regularize non-compliances without facing the brunt of late fees or penalties. As the deadline of June 30, 2025 approaches, timely action is critical. GST Amnesty Scheme application issues is a challenge reported by many Tax Professionals fearing to meet June 30 GST deadline.

The Persistent Problem: Technical Glitches in SPL-01/SPL-02 Filing / GST portal error

Many taxpayers have reported repeated failures in submitting their amnesty forms, with error messages indicating that the demand order cannot be recognized by the system. This has led to delays and anxiety among users.

Reference:

GSTN’s Official Solution: Alternate Filing Mechanism for GST Amnesty Scheme application issues (Advisory 609)

To resolve this issue, GSTN has provided a manual workaround via the SPL-01/SPL-02 application process. Here’s how it works:

Step 1: Initiate Application with Manual Override

Select ‘No’ for the question “Whether the demand order is issued through the GST Portal”.

Step 2: Prefix ‘ONL’ to Your Order Number

In the “Details of demand order” field, add ‘ONL’ before your order number (e.g., enter ONLABCDE12345X1Z2 instead of ABCDE12345X1Z2).

Important: If the actual online order number is entered without modification, the system will reject the manual filing.

Step 3: Manually Enter Basic Details

Enter values in the editable Basic Details table. Mobile No. & E-mail ID should be selected from the dropdown options.

Step 4: Enter Order, Payment & Demand Details

Once Step 3 is complete, manually input the Order, Payment, and Demand information.

Special Note:

If payment is made using the “Payment towards demand” feature, these details cannot be entered in Table 4. Taxpayers must upload supporting documents separately.

Why These Workarounds Are Risky 

  • Error-Prone: Manual entries under pressure can lead to costly mistakes.
  • Time-Intensive: The manual process consumes hours better spent on business-critical activities.
  • Missed Deadlines: A failed workaround could mean missing the amnesty window entirely.

How TaxPower GST Minimizes These Risks

Although TaxPower GST does not manage SPL-01/SPL-02 filing (a GSTN portal-specific function), it ensures that your underlying GST data is always accurate — reducing the need for appeals in the first place.

  • Accurate Filing: Automates and validates your GSTR-1, GSTR-3B, and payment records.
  • Quick Data Retrieval: Instantly pull supporting documents for manual uploads.
  • Built-In Alerts: Notification system to help prevent non-compliance issues.

Frequently Asked Questions (FAQs)

What is GSTN Advisory 609?

It’s an official guide from GSTN offering a manual workaround for taxpayers unable to file SPL-01/SPL-02 due to system issues.

Is the June 30, 2025 deadline for waiver application final?

Yes, as of now there is no extension. Delay may result in forfeiting amnesty benefits.

Can I file SPL-01 without ‘ONL’ in the order number?

No. The system will block the form unless ‘ONL’ is used as a prefix during manual filing.

Does TaxPower GST help with SPL-01/SPL-02?

Not directly. But it simplifies refund, return, and demand data which can be used in these forms.

What if I already paid via ‘Payment towards demand’?

That data must be uploaded separately as Table 4 won’t accept it.

Conclusion

Don’t let a technical glitch of GST Amnesty Scheme application issues derail your compliance and don’t miss June 30 GST deadline for amnesty scheme. Use the workaround provided by GSTN to file your SPL-01/SPL-02 manually — and let TaxPower GST handle your return data flawlessly.

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Disclaimer: This blog is intended for informational purposes only and should not be considered legal or financial advice. Readers are encouraged to independently verify all applicable GST laws, regulations, CBIC advisories, GSTN guidelines, and E-Way Bill rules before making decisions. The author and publisher are not responsible for any actions taken based on the information provided here.